Repurposed genes responsible for unique fins of skates and rays, study finds

Kevin Jiang
Science Writer and Media Relations SpecialistUniversity of Chicago Medicine and Biological Sciences

The evolution of the striking, wing-like pectoral fins of skates and rays relied on repurposed genes, according to new research by scientists from the University of Chicago. Studying embryonic skates, they discovered that the rear portion of the fin is built by typical limb-development genes; but the front portion develops through a different set of genes that are usually found in the shoulder areas of other species.

The findings, published Dec. 7 in the Proceedings of the National Academy of Sciences, shed light on the genetic mechanisms responsible for the evolution and diversification of vertebrate appendages.

“What is surprising is that the extraordinary anatomy of skate fins comes about by simple tweaks to the processes that make the more normal-looking fins of other fish,” said senior study author Neil Shubin, the Robert R. Bensley Professor of Organismal Biology and Anatomy.

How the limbs of tetrapods, or four-legged animals, develop is an area of intense research in biology, with great strides made in understanding the genetics and molecular mechanisms involved. However, much less is known about how fish acquired their remarkable diversity in fin shape and function—including at least one set that became adapted for life on land.

To study how fins evolve and diversify, Shubin and his team, led by Tetsuya Nakamura, postdoctoral fellow at the University of Chicago, analyzed gene expression in the embryos of batoids. A group of cartilaginous fish including skates and rays, they evolved from an ancient lineage of shark that dramatically altered its body plan to adapt to life on ocean or river bottoms. With flat bodies and broad pectoral fins that are fused to their heads, batoids possess one of the most unique appendage shapes among vertebrates.

The researchers discovered that the pectoral fins of embryonic skates, at least early on, mirrored limb development in other species of fish and tetrapod. A group of genes and growth factors are expressed in precise patterns in the budding appendage, which help create the apical ectodermal ridge (AER)—a region that stimulates cell proliferation along the growing edge of the limb and is essential for elongation, organization and proper development.

Most species have one AER per appendage, but the team found that skates will develop two—one that directs pectoral fin growth toward the tail, while the other directs growth toward the head.

Remarkably, different groups of genes appear to control the two regions. Among the many genes involved, the 5’Hox family of transcription factors and the Fgf10 growth factor play a central role in forming and maintaining the AER in most fish and tetrapods. In skates, these genes were present and functioning as normal in the fin region growing toward the tail. The region oriented toward the head, however, was maintained by a separate group of genes—most prominently, 3’Hox transcription factors and Fgf7.

“Even though the posterior and anterior regions of a skate fin look similar, gene expression is totally different,” Nakamura said. “This indicates that they have very different mechanisms that control growth of the anterior portion, which are not found in tetrapods or other fish. I think these genes are very important for the evolution of skate or stingray shapes.”

Although the 3’Hox and 5’Hox gene families and Fgf7 and Fgf10 respectively are related to each other, they normally perform different functions at different locations. In most species, 3’Hox genes and Fgf7 are observed at the base of the budding limb, around where the shoulder would eventually be. The expression of these genes in the pectoral fin, and their role in creating a second AER, appears to be a unique adaptation possessed by batoids.

The researchers are further exploring the genetic mechanisms involved in the development of batoid fins, as well as other distinctive fin shapes in other species.

“Skates appear to have redeployed a pre-existing genetic module to the anterior of their fins, which enabled the evolution of their unique shape,” Nakamura said. “A better understanding of these molecular mechanisms will help us answer questions about the general diversity of fish fins—how they changed shapes, what shapes are possible, what molecular kits can be recruited, and ultimately how fins transitioned into tetrapod limbs.”

The study, “Molecular mechanisms underlying the exceptional adaptations of batoid fins,” was supported by The Brinson Foundation, the Japanese Society for the Promotion of Science, Uehara Memorial Foundation, Brazilian National Council for Scientific and Technological Development, and the National Institutes of Health. Additional authors include Jeff Klomp, Joyce Pieretti, Igor Schneider and Andrew R. Gehrke.